Webinst/doc/fithic.R defines the following functions: rdrr.io Find an R package R language docs Run R in your browser. FitHiC Confidence estimation for intra-chromosomal contact maps. Package index. Search the FitHiC package. Vignettes. README.md How to … WebNov 8, 2024 · In FitHiC: Confidence estimation for intra-chromosomal contact maps Introduction. Fit-Hi-C is a tool for assigning statistical confidence estimates to intra …
GitHub - ay-lab/fithic: Fit-Hi-C is a tool for assigning statistical
WebThe text was updated successfully, but these errors were encountered: WebFit-Hi-C. Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C. Compared to Python original, Fit-Hi-C … diabetes clinic moncton
How to Use Fit-Hi-C R Package - Bioconductor
Fit-Hi-C (or FitHiC) was initially developed by Ferhat Ay, Timothy Bailey, and William Noble January 19th, 2014. It is currently maintained and updated by Ferhat Ay ([email protected]) and Arya Kaul ([email protected]) at the Ay Labin the La Jolla Institute for Allergy and Immunology. The current version is named as … See more Fit-Hi-C may be installed through one of three ways. 1. Bioconda 2. Github 3. Pip Out of all of the following, we recommend installing through bioconda to automatically install … See more A good part of any software installation is being able to run tests on the correct installation of it. See more Congratulations! If you have gotten to this point, then you have a working, fully installed version of Fit-Hi-C running on your computer. Good on you! But that was the easy part, now comes the difficult question. How do I … See more WebDOI: 10.18129/B9.bioc.FitHiC This is the development version of FitHiC; for the stable release version, see FitHiC.. Confidence estimation for intra-chromosomal contact maps. Bioconductor version: Development (3.17) Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide … WebAug 21, 2024 · cd fithic_results/ fithic -f fithic.fragmentMappability.gz -i fithic.interactionCounts.gz -r 5000 -o ./ -t fithic.biases.gz -l fithic_5kb -U 5000000 -L 10000 -v It is recommended to specify an upper and lower bound on the range of the intra-chromosomal interactions by setting the -U and -L parameters. cinderellas edinburgh